Ph.D

Equipe GENOEV

Institut de Génomique Fonctionnelle de Lyon, UMR5242

Ecole Normale Supérieure de Lyon

46, allée d'Italie, 69364 Lyon Cedex 07

+33 (0)4 26 73 13 22

magali.naville_at_ens-lyon.fr



TEACHING

Sept. 2012 - today "Agrégé-préparateur" (96h/year)
  • "Préparation à l'agrégation SV-STU" (~50h/year) : trainings for the competitive examination written test; oral trainings; lectures of cell biology and evolution.
  • Licence (~35h/year) : bioinformatics practicals.
  • Master 1 (~10h/year) : tutoring for the writing of bibliographic projects.

2013-2014 Oral tests in "Prépa BCPST", Lycée Assomption-Bellevue, Lyon

  • Biology & geology

Teaching manual for Life & Earth Sciences "4ème" (in French)
Co-author
             Available here

Sept. 2007 - June 2010
  'Monitorat',  Paris-Sud XI Univ.
  • "Préparation aux Cursus Scientifiques, année 0" (~50h/year) : plant biology, animal biology, molecular & cellular biology, microbiology
  • "Préparation à l'agrégation SV-STU" (~15h/year) : trainings for the competitive examination written test; oral trainings.
2007-2008 Oral tests in "Prépa BCPST", Lycée St Louis, Paris
  • Biology & Geology



    
RESEARCH
From sept. 2012 till today        Post-doctoral (AGPR) fellow in GENOEV team,
                                                                                  Jean-Nicolas VOLFF
Analysis of the impact of transposable elements in vertebrate    genomes evolution and functioning
Sept. 2010 - Aug. 2012          Post-doctoral fellow in DYOGEN team,
                                                                      Hugues ROEST CROLLIUS
Identification and analysis of genomic regulatory systems involved in X-linked neurological diseases. 

Sept. 2007 - Sept. 2010   Thesis,  "Séquence, Structure et Fonction des ARNs" team, Daniel GAUTHERET, IGM, Orsay Paris-Sud

A large-scale approach for the identification and analysis of transcription attenuators in Bacteria. Available here

Janv. 2007 - July 2007          Master 2 project, DYOGEN team, Hugues ROEST CROLLIUS
Computational analysis of gene retentions following genome duplication in Teleostean fishes.

PUBLICATIONS
Magali Naville
, Jean-Nicolas Volff (2016) Endogenous retroviruses in fish genomes: from relics of past infections to evolutionary innovations? Frontiers in Microbiology 7:1197.

Magali Naville, Ian A. Warren, Zofia Haftek-Terreau, Domitille Chalopin, Frédéric Brunet, Perrine Levin, Delphine Galiana, Jean-Nicolas Volff (2016) Not so bad after all: retroviruses and LTR retrotransposons as a source of new genes in vertebrates. Clinical Microbiology and Infection 22(4):312-323. DOI: 10.1016/j.cmi.2016.02.001.

Philippe Pérot, Christina S. Mullins, Magali Naville, Cédric Bressan, Maja Hühns, Michael Gock, Florian Kühn, Jean-Nicolas Volff, Véronique Trillet-Lenoir, Michael Linnebacher, François Mallet (2015) Expression of young HERV-H loci in the course of colorectal carcinoma and correlation with molecular subtypes. Oncotarget  doi: 10.18632/oncotarget.5539

Ian A. Waren, Magali Naville, Domitille Chalopin, Perrine Levin, Chloé Suzanne Berger, Delphine Galiana, Jean-Nicolas Volff (2015) Evolutionary impact of transposable elements on genomic diversity and lineage-specific innovation in vertebrates. Chromosome Research doi:10.1007/s10577-015-9493-5.

Magali Naville, Domitille Chalopin, Didier Casane, Patrick Laurenti and Jean-Nicolas Volff (2015) The coelacanth: Can a "living-fossil" have active transposable elements in its genome? Mobile Genetic Elements 5(4):55-59.

Magali Naville et al (2015) Long-range evolutionary constraints reveal cis-regulatory interactions on the human X chromosome. Nature Communications 6:6904.

Domitille Chalopin, Magali Naville, Floriane Plard, Delphine Galiana and Jean-Nicolas Volff (2015). Comparative analysis of transposable elements highlights mobilome diversity and evolution in vertebrates. Genome Biology and Evolution doi:10.1093/gbe/evv005.

Magali Naville, Domitille Chalopin and Jean-Nicolas Volff (2014). Interspecies insertion polymorphism analysis reveals recent activity of transposable elements in extant coelacanths. PLoS One doi:10.1371/journal.pone.0114382.

Alberto Stolfi et al (2014). Guidelines for the nomenclature of genetic elements in tunicate genomes. Genesis doi:10.1002/dvg.22822.

François Cartault et al (2012). Mutation in a primate-conserved retrotransposon reveals a noncoding RNA as a mediator of infantile encephalopathy. PNAS 109(13):4980-4985.

Magali Naville, Adrien Guilhot-Gaudeffroy, Antonin Marchais and Daniel Gautheret (2011). ARNOLD :a web tool for the prediction of Rho-independent transcription terminators. RNA Biology 8:1,1-3.

Magali Naville and Daniel Gautheret (2010). Premature terminator analysis sheds light on a hidden world of bacterial transcriptional attenuation. Genome Biology 11:R97.

Magali Naville and Daniel Gautheret (2010). Transcription attenuation in Bacteria: theme and variations. Briefings in Functional Genomics and Proteomics 9:178-189.

Antonin Marchais, Magali Naville, Chantal Bohn, Philippe Bouloc and Daniel Gautheret (2009). Single-pass classification of all noncoding sequences in a bacterial genome using phylogenetic profiles. Genome Research 19:1084-1092.

 
 
 
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